R/05-unit_checks.R
check_dataset_valueType.RdGenerates a data frame report of any incompatibility between variable values in a dataset and the declared valueType in the associated data dictionary. This report can be used to help assess data structure, presence of fields, coherence across elements, and taxonomy or data dictionary formats.
check_dataset_valueType(dataset, data_dict = NULL, valueType_guess = FALSE)A dataset object.
A list of data frame(s) representing metadata to be evaluated.
Whether the output should include a more accurate valueType that could be applied to the dataset. FALSE by default.
A data frame providing values which valueType differs between dataset and their data dictionary.
A data dictionary contains the list of variables in a dataset and metadata
about the variables and can be associated with a dataset. A data dictionary
object is a list of data frame(s) named 'Variables' (required) and
'Categories' (if any). To be usable in any function, the data frame
'Variables' must contain at least the name column, with all unique and
non-missing entries, and the data frame 'Categories' must contain at least
the variable and name columns, with unique combination of
variable and name.
A dataset is a data table containing variables. A dataset object is a data frame and can be associated with a data dictionary. If no data dictionary is provided with a dataset, a minimum workable data dictionary will be generated as needed within relevant functions. Identifier variable(s) for indexing can be specified by the user. The id values must be non-missing and will be used in functions that require it. If no identifier variable is specified, indexing is handled automatically by the function.
The valueType is a declared property of a variable that is required in certain functions to determine handling of the variables. Specifically, valueType refers to the OBiBa data type of a variable. The valueType is specified in a data dictionary in a column 'valueType' and can be associated with variables as attributes. Acceptable valueTypes include 'text', 'integer', 'decimal', 'boolean', datetime', 'date'. The full list of OBiBa valueType possibilities and their correspondence with R data types are available using valueType_list. The valueType can be used to coerce the variable to the corresponding data type.
{
check_dataset_valueType(mtcars[2], valueType_guess = TRUE)
}
#> # A tibble: 1 × 4
#> name_var value condition suggestion
#> <chr> <chr> <chr> <chr>
#> 1 cyl decimal [INFO] - refined valueType proposed integer